We present an automated radar data analysis algorithm developed to calculate probability distributions of meteor- and meteoroid parameters for head echoes detected with the Middle and Upper atmosphere (MU) radar in Shigaraki, Japan. The algorithm utilizes direct Monte Carlo simulations of uncertainties, with Bayesian Markov-chain Monte Carlo estimation of meteor model parameters and N-body propagation of distributions to perform orbit determination. The implementation has been validated using raw data simulations and a comparison with previous analysis methods. The concepts are applicable on a wide range of possible head echo measurements with other radar systems. The generated probability distributions provide quantitative reliability, which enables improved statistical studies and investigating the origins of detected meteoroids. The methodology section is highly detailed in order for the methods to be reproducible and provide a solid reference foundation for future studies. One such study is presented in a companion paper called ‘High-altitude meteors detected by the interferometric MU radar’.