The cytochrome systems of two classes of aquatic fungi, the Oomycetes and Chytridiomycetes, were studied by means of reduced-minus-oxidized difference spectra at room and at low temperature. At room temperature, all of these fungi have a c-type cytochrome with an absorption maximum at 551 m,u and a b-type cytochrome at 564 m,u. The Oomycetes have a-type cytochromes at 605 m,u, and the Chytridiomycetes have a-type cytochromes at 606 m,u (Blastocladiales) or at 609 m,u (Monoblepharidales). Additional b-type cytochromes are found at 557 m,u in the Oomycetes and at approximately 560 m,u in the Chytridiomycetes. The data obtained from spectra at low temperature are consistent with these conclusions. Thus, the difference spectra reveal variation between the cytochrome systems of these two classes of aquatic fungi.