Adherent-invasive
Escherichia coli
(AIEC) strain LF82, isolated from patients with Crohn’s disease, invades gut epithelial cells, and replicates in macrophages contributing to chronic inflammation. In this study, we found that RstAB contributing to the colonization of LF82 in a mouse model of chronic colitis by promoting bacterial replication in macrophages. By comparing the transcriptomes of
rstAB
mutant- and wild-type when infected macrophages, 83 significant differentially expressed genes in LF82 were identified. And we identified two possible RstA target genes (
csgD
and
asr
) among the differentially expressed genes. The electrophoretic mobility shift assay and quantitative real-time PCR confirmed that RstA binds to the promoters of
csgD
and
asr
and activates their expression.
csgD
deletion attenuated LF82 intracellular biofilm formation, and
asr
deletion reduced acid tolerance compared with the wild-type. Acidic pH was shown by quantitative real-time PCR to be the signal sensed by RstAB to activate the expression of
csgD
and
asr
. We uncovered a signal transduction pathway whereby LF82, in response to the acidic environment within macrophages, activates transcription of the
csgD
to promote biofilm formation, and activates transcription of the
asr
to promote acid tolerance, promoting its replication within macrophages and colonization of the intestine. This finding deepens our understanding of the LF82 replication regulation mechanism in macrophages and offers new perspectives for further studies on AIEC virulence mechanisms.