This study explores the interplay between nitrogen doses and seeding rates on wheat yield, biomass, and protein content. Utilizing tools such as the Normalized Difference Vegetation Index (NDVI), Soil Plant Analysis Development (SPAD) measurements, and canopy temperature (CT), we conducted experiments over five growing seasons. The treatments included three nitrogen levels (0, 60, 120 kg/ha) and three seeding rates (300, 400, 500 seeds/m2) in a split-plot design with 90 plots and two replications. Our results show that an intermediate nitrogen dose (60 kg/ha) combined with a moderate seed rate (400 seeds/m2) enhances wheat yield by 22.95%. Reduced nitrogen levels increased protein content, demonstrating wheat’s adaptive mechanisms under nitrogen constraints. NDVI analysis highlighted significant growth during the tillering phase with high nitrogen, emphasizing early-stage nutrient management. SPAD measurements showed that early nitrogen applications boost chlorophyll content, essential for vigorous early growth, while CT data indicate that optimal nitrogen and seed rates can effectively modulate plant stress responses. As crops mature, the predictive capacity of NDVI declines, indicating the need for adjusted nitrogen strategies. Collectively, these findings advocate for refined management of nitrogen and seeding rates, integrating NDVI, SPAD, and CT assessments to enhance yields and promote sustainable agricultural practices while minimizing environmental impacts.