The process of making cement clinker uses a lot of energy and produces a lot of pollution. Currently, cement companies use a combination of traditional fossil fuels and alternative fuels (AF-Fuels) to lower their energy consumption and environmental footprint by improving the pyro-system. In a calciner, AF-Fuels can reach a thermal substitution rate (TSR) of up to 80–100%. However, a kiln burner can only achieve a TSR of 50–60%. High TSR values have been provided by improvements in multi-channel burners, proper AF-Fuel feeding point setups, and various AF pre-combustion methods. Significant modeling of the calciner burner and system has also improved TSRs. However, the cement industry has encountered operational problems such as kiln coating build-up, reduced flame temperatures, higher specific heat consumption, and incomplete combustion. There is growing interest in waste substitution, a promising source of AF-Fuel that needs to be integrated into the current cement plant design to solve the calciner operational problems of the cement industry. This study discusses the latest developments and different experimental and modeling studies performed on the direct burning/co-firing of AF-Fuel in the cement industry as well as the incorporation of gasification in cement manufacturing. Based on this, a technically and environmentally improved solution is proposed. The characteristics of both approaches towards pre-calciner function and optimization are critically assessed. The many in-line cement calciner integration technologies and their various configurations for the long-term problems of cement plants are discussed. This project report also focuses on the necessity of creating appropriate calciner models for forecasting calciner production based on various AF-Fuels and their feeding positions in the calciner.