Background In this study, the protective effects of trans-resveratrol against 1,4-dioxane induced toxicity in meristematic cells were investigated. For this purpose, Allium test which is a reliable test was used and the alterations in all experimental groups were examined by using physiological, cytogenetic, biochemical and anatomical parameters.Results As a result of the analysis, it has been determined that 1,4-dioxane causes serious abnormalities in Allium cepa meristematic cells. It was determined that in 1,4-dioxane treated group germination percentage regressed 1.6-times, root length reduced 12.7-times and weight gain decreased 7.7-times compared to control group. It has been observed that trans-resveratrol administration with 1,4-dioxane causes improvement in physiological parameters and reduces the damage rate from 0.4 to 0.16. Mitotic index, micronucleus and chromosomal abnormality frequency were investigated as cytogenetic parameters. It was determined that mitotic index decreased, chromosomal abnormalities and micronucleus frequency increased in 1,4-dioxane treated group. Trans-resveratrol treatment was found to cause a dose dependent improvement in genotoxic effects induced by 1,4-dioxane. Changes in the antioxidant system in all experimental groups were determined by measuring malondialdehyde, glutathione, superoxide dismutase and catalase enzyme levels. It was determined that 1,4-dioxane administration caused an increase in malondialdehyde level, decreased glutathion rate and induced antioxidant enzyme activity. Trans-resveratrol application was found to cause improvement in these alterations induced by 1,4-dioxane. It was observed that the 200 mg/mL trans-resveratrol+1,4-dioxane treatment caused a 1.9-fold decrease in malondialdehyde level which is indicator of lipid peroxidation compared to only 1,4-dioxane treated group. The abnormalities caused by 1,4-dioxane application in the meristematic cells are also found in the anatomical structure. In 1,4-dioxane treatment group, anatomical changes such as cell deformation and cortex wall thickening were observed. The frequency of these changes decreased with trans-resveratrol administration.Conclusions As a result, it was determined that 1,4-dioxane caused a versatile toxicity in Allium cepa meristematic cells, while trans-resveratrol was found to have a dose-dependent protective feature against 1,4-dioxane-induced toxicity.