Duplication of opsin genes has a crucial role in the evolution of visual system. Zebrafish have four green-sensitive (RH2) opsin genes (RH2-1, RH2-2, RH2-3, and RH2-4) arrayed in tandem. They are expressed in the short member of the double cones (SDC) but differ in expression areas in the retina and absorption spectra of their encoding photopigments. The shortest and the second shortest wavelength subtypes, RH2-1 and RH2-2, are expressed in the central-to-dorsal retina. The longer wavelength subtype, RH2-3, is expressed circumscribing the RH2-1/RH2-2 area, and the longest subtype, RH2-4, is expressed further circumscribing the RH2-3 area and mainly occupying the ventral retina. The present report shows that a 0.5-kb region located 15 kb upstream of the RH2 gene array is an essential regulator for their expression. When the 0.5-kb region was deleted from a P1-artificial chromosome (PAC) clone encompassing the four RH2 genes and when one of these genes was replaced with a reporter GFP gene, the GFP expression in SDCs was abolished in the zebrafish to which a series of the modified PAC clones were introduced. Transgenic studies also showed that the 0.5-kb region conferred the SDC-specific expression for promoters of a non-SDC (UV opsin) and a nonretinal (keratin 8) gene. Changing the location of the 0.5-kb region in the PAC clone conferred the highest expression for its proximal gene. The 0.5-kb region was thus designated as RH2-LCR analogous to the locus control region of the L-M opsin genes of primates.gene duplication ͉ GFP reporter ͉ transgenesis F unctional differentiation of duplicated genes is important for organismal evolution and is achieved through modifications of not only coding regions but also regulatory mechanisms of the gene expression in the duplicates. The regulatory mechanism for the spatial and the temporal coordination of gene expression among duplicated genes has been a subject of intense interest (1, 2). Gene duplications have an essential role in the evolution of the visual system. The visual opsins in vertebrates are classified into five phylogenetic types that originated before the vertebrate radiation: rod opsin or rhodopsin (RH1); RH1-like, or green cone opsin (RH2); short wavelength-sensitive type 1, or UV-blue cone opsin (SWS1); short wavelength-sensitive type 2, or blue cone opsin (SWS2); and middle-to long-wavelength-sensitive, or redgreen cone opsin (M/LWS) (3). However, the understanding of the regulatory mechanisms for the differential expression among the five types is still fragmentary. Subtypes of the visual opsins, created by more recent gene duplications, provide an excellent model to study the regulatory evolution of duplicated genes. A well documented example is the locus control region (LCR) of the L-M opsin genes (subtypes of M/LWS) arrayed on the X chromosome in the catarrhine primates (Old World monkeys, apes, and humans) (4).The primate L-M opsin LCR is located at Ϸ3.5 kb upstream of the gene array and interacts with only the most proximal or the second proximal gene o...