Quorum‐sensing (QS) mechanisms are important in intra‐ and inter‐specific communication among bacteria. We investigated QS mechanisms in Bradyrhizobium japonicum strain CPAC 15 and Azospirillum brasilense strains Ab‐V5 and Ab‐V6, used in commercial co‐inoculants for the soybean crop in Brazil. A transconjugant of CPAC 15‐QS with partial inactivation of N‐acyl‐homoserine lactones (AHLs) was obtained and several parameters were evaluated; in vitro, CPAC 15 and the transconjugant differed in growth, but not in biofilm formation, and no differences were observed in the symbiotic performance in vivo. The genome of CPAC 15 carries functional luxI and luxR genes and low amounts of three AHL molecules were detected: 3‐OH‐C12‐AHL, 3‐OH‐C14‐AHL, and 3‐oxo‐C14‐AHL. Multiple copies of luxR‐like genes, but not of luxI are present in the genomes of Ab‐V5 and Ab‐V6, and differences in gene expression were observed when the strains were co‐cultured with B. japonicum; we may infer that the luxR‐genes of A. brasilense may perceive the AHL molecules of B. japonicum. Soybean symbiotic performance was improved especially by co‐inoculation with Ab‐V6, which, contrarily to Ab‐V5, did not respond to the AHLs of CPAC 15. We concluded that A. brasilense Ab‐V5, but not Ab‐V6, responded to the QS signals of CPAC 15, and that the synergistic interaction may be credited, at least partially, to the QS interaction. In addition, we confirmed inter‐ and intra‐species QS communication between B. japonicum and A. brasilense and, for Azospirillum, at the strain level, impacting several steps of the symbiosis, from cell growth to plant nodulation and growth.