This review summarizes recent evidence concerning hormonal and sex chromosome effects in obesity, atherosclerosis, aneurysms, ischemia/reperfusion injury, and hypertension. Cardiovascular diseases (CVD) occur and progress differently in the two sexes, because biological factors differing between the sexes have sex-specific protective and harmful effects. By comparing the two sexes directly, and breaking down sex into its component parts, one can discover sex-biasing protective mechanisms that might be targeted in the clinic. Gonadal hormones, especially estrogens and androgens, have long been found to account for some sex differences in CVD, and molecular mechanisms mediating these effects have recently been elucidated. More recently the inherent sexual inequalities in effects of sex chromosome genes have also been implicated as contributors in animal models of CVDs, especially a deleterious effect of the second X chromosome found in females but not in males. Hormonal and sex chromosome mechanisms interact in the sex-specific control of certain diseases, sometimes by opposing the action of the other.