We develop long-period and long-duration ground motion prediction equations for earthquakes along the Sagami Trough based on strong motion records. The site factors are estimated at the engineering bedrock by using shallow structure models developed by NIED. The obtained amplification factors are smaller than those for earthquakes along the Nankai Trough. The developed equations are applied to the 1923 Taisho Kanto type earthquake and the hypothesized south Tokyo metropolitan earthquake. The ground motions predicted for the 1923 Taisho Kanto type earthquake are consistent to a record observed at Hongo and ones predicted by 3D-FDM by HERP.