The movement of ammonium across biological membranes is mediated in both prokaryotes and eukaryotes by ammonium transport proteins (AMT/MEP) that constitute a family of related sequences. We have previously identified two ammonium permeases in Aspergillus nidulans, encoded by the meaA and mepA genes. Here we show that meaA is expressed in the presence of ammonium, consistent with the function of MeaA as the main ammonium transporter required for optimal growth on ammonium as a nitrogen source. In contrast, mepA, which encodes a high-affinity ammonium permease, is expressed only under nitrogen-limiting or starvation conditions. We have identified two additional AMT/MEP-like genes in A. nidulans, namely, mepB, which encodes a second high-affinity ammonium transporter expressed only in response to complete nitrogen starvation, and mepC, which is expressed at low levels under all nitrogen conditions. The MepC gene product is more divergent than the other A. nidulans AMT/MEP proteins and is not thought to significantly contribute to ammonium uptake under normal conditions. Remarkably, the expression of each AMT/MEP gene under all nitrogen conditions is regulated by the global nitrogen regulatory GATA factor AreA. Therefore, AreA is also active under nitrogen-sufficient conditions, along with its established role as a transcriptional activator in response to nitrogen limitation.Ammonium transport proteins (AMT/MEP) have been identified in bacteria, fungi, plants, and animals and constitute a conserved family of polytopic membrane proteins (54). AMT/MEP proteins are predicted to contain 11 transmembrane (TM) helices with an N out -C in topology (26, 48). Bioinformatic topology predictions indicate that bacterial AMT/MEP proteins generally contain an additional N-terminal TM domain but that this region acts as a signal peptide which is removed from the mature protein (9). Aside from the small cytoplasmic loop between TM domains 3 and 4 that displays sequence similarity to a major facilitator superfamily motif (34), the AMT/MEP sequences represent a unique group of transport membrane proteins. Although over 300 members of the AMT/MEP/Rh family have currently been assigned based on amino acid sequence similarity (Pfam accession number PF00909), an ammonium transport function has not been confirmed for the vast majority of these sequences. Functional permeases have been described for bacteria, fungi, plants (reviewed in reference 54), and humans, where the rhesus blood group polypeptides, which display significant sequence identity to AMT/MEP proteins, have been shown to function as ammonium transporters in other systems (27,53,55,59). The structure of Escherichia coli AmtB has been determined up to 1.35-Å resolution, and structural analysis revealed that the protein functions as a trimer that recruits ammonium which is then channeled as ammonia (18,58). Genetic, molecular, and/or physiological evidence suggests that AMT/MEP proteins can function as homoand/or heterocomplexes (6,25,29,34).The presence of multiple ammonium ...