Membrane proteins, encoded by ~20% of genes in almost all organisms, including humans, are critical for cellular communication, electrical and ion balances, structural integrity of the cells and their adhesions, and other functions. Atomic-resolution structures of these proteins furnish important information for understanding their molecular organization and constitute major breakthroughs in our understanding of how they participate in physiological processes. However, obtaining structural information about these proteins has progressed slowly (1,2), mostly because of technical difficulties in the purification and handling of integral membrane proteins. Instability of the proteins in environments lacking phospholipids, the tendency for them to aggregate and precipitate, and/or difficulties with highly heterogeneous preparations of these proteins isolated from heterologous expression systems have hindered application of standard structure determination techniques to these molecules.Among membrane proteins, G-protein-coupled receptors (GPCRs) 1 are of special importance because they form one of the largest and most diverse groups of receptor proteins. More than 400 nonsensory receptors identified in the human genome are involved in the regulation of virtually all physiological processes. Drug addiction, mood control, and memory (via 5-HT6 or neuropeptide receptors) are just a short list of processes in which GPCRs are critically implicated. Another even larger group of GPCRs consist of sensory receptors involved in the fundamental process of translation of light energy (rhodopsin and cone pigments), the detection † This research was supported by NIH Grant EY-09339, awards from Research to Prevent Blindness, Inc. (RPB) SUPPORTING INFORMATION AVAILABLE Tabular listing of the following topics: tilt of the helices, bends within helices, possible hydrogen bonds between helices, closest atoms to the 11-cis-retinal, retinal atoms closest to these protein atoms, and torsion angles for the chromophore. This material is available free of charge via the Internet at http://pubs.acs.org. 1 Abbreviations: GPCR, G-protein-coupled receptor; MAN, β-D-mannose; NAG, 2-N-acetyl-β-D-glucose; BNG, β-nonylglucoside; |F o |, observed structure factor; |F c |, calculated structure factor. R = ∑||F o | − |F c ||/∑|F o |. R cryst is the value for the working set of |F o |, while R free is that calculated for the 5% of reflections set aside for cross validation.,
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Author ManuscriptBiochemistry. Author manuscript; available in PMC 2006 December 14.
NIH-PA Author ManuscriptNIH-PA Author Manuscript NIH-PA Author Manuscript of chemoattractant molecules, or the detection of compounds stimulating the taste buds (3,4). The activity of GPCRs comes about when binding of diffusable extracellular ligands causes them to switch from quiescent forms to an active conformation capable of interaction with hundreds of G-proteins. Their roles as extracellular ligand-binding proteins make them attractive targets for drug design. GPCRs account ...