Macroinvertebrates were sampled in seven microhabitats (submerged woody debris, reeds, sedges, inundated grass, floating aquatic vegetation, lignum, and the unvegetated littoral) at thirteen sites representing six macrohabitats (single temporary and permanent ox-bow lakes (billabongs), fast and slow-flowing anabranches, backwaters, and the main channel) of the River Murray, and Australian lowland river. Sites were sampled in spring 1988, shortly after floodwaters had receded.Most of the 95 taxa collected were aquatic insects. Detritivores were most abundant in all macrohabitats except the temporary billabong where predators predominated. Scrapers were only abundant in the permanent billabong. The temporary billabong harboured the most species and individuals whereas slowly-flowing anabranches contained the fewest species and individuals. At the microhabitat level, most taxa and individuals occurred in stands of aquatic vegetation. The unvegetated littoral zone was the most depauperate microhabitat.Multivariate analyses illustrated the distinctiveness of the faunal assemblage found in the temporary billabong. Subsequent analyses of the permanently inundated macrohabitats indicated gradients related to current velocity and the extent to which the sites were continuous with the main river. Current velocity apparently determined assemblage composition at the macrohabitat scale whereas the structural complexity of submerged vegetation operated at the microhabitat scale.The relatively large number of taxa collected from this area emphasizes the importance of a range of macrohabitats and microhabitats to faunal diversity in a floodplain ecosystem. Although there was little faunal overlap between billabongs and the main river, billabongs probably serve as refuges for many lentic taxa that rely upon regular inundation to survive. Surveys of floodplain rivers for management purposes must include samples from aquatic habitats adjacent to the main channel because the fauna of the floodplain is potentially most threatened by regulation and alteration of the flooding regime.
