Background
Helicobacter pylori
recurrence after successful eradication is an important problem. Children are particularly vulnerable to reinfection, by intrafamilial transmission which facilitates the acquisition or recombination of new genetic information by this bacterium. We investigated the evolutionary dynamics of 80
H. pylori
strains isolated from two paediatric patients with recurrent infection (recrudescence and reinfection).
Results
We characterized the virulence genes
vacA
(
s1
,
m1
,
s2
, and
m2
),
cagA
,
cagE
, and
babA2
and performed multilocus sequence typing (MLST) on 7 housekeeping genes (
atpA
,
efp
,
ureI
,
ppa
,
mutY
,
trpC
, and
yphC
) to infer the evolutionary dynamics of the
H. pylori
strains through phylogenetic and genealogic inference analyses, genetic diversity analysis and the exploration of recombination events during recurrent infections. The virulence genotype
vacAs1m1/cagA+/cagE+/babA2
was present at a high frequency, as were the EPIYA motifs EPIYA-A, −B and -C. Furthermore, the housekeeping genes of the
H. pylori
strains exhibited high genetic variation, comprising 26 new alleles and 17 new Sequence Type (ST). In addition, the hpEurope (76.5%) and hspWAfrica (23.5%) populations predominated among the paediatric strains. All strains, regardless of their ancestral affiliation, harboured western EPIYA motifs.
Conclusions
This study provides evidence of the evolutionary dynamics of the
H. pylori
strains in two paediatric patients during recrudescence and reinfection events. In particular, our study shows that the strains changed during these events, as evidenced by the presence of different STs that emerged before and after treatment; these changes may be due to the accumulation of mutations and recombination events during the diversification process and recolonization of the patients by different genotypes.
Electronic supplementary material
The online version of this article (10.1186/s12866-019-1554-z) contains supplementary material, which is available to authorized users.