“…Previous watershed‐level riverscape genetics studies on other species have indicated temperature (Dionne, Caron, Dodson, & Bernatchez, ), natural features such as slope, elevation, waterfalls, and confluences (Pilger, Gido, Propst, Whitney, & Turner, ; Salisbury, McCracken, Keefe, Perry, & Ruzzante, ), or combinations of hydrologic variables and barriers (McCracken et al., ; Raeymaekers et al., ; Roberts, Angermeier, & Hallerman, ) contribute to genetic structuring of lotic fishes. Studies of brook trout genetics at watershed levels have found contradicting results in degree of connectivity, indicating that mainstem characteristics (Aunins et al., ) or watershed positioning (Rogers & Curry, ) may be influential. The patterns documented in FR suggest that development in the watershed, paired with reductions in riparian canopy cover, increases fragmentation among populations.…”