Two RNase H (RNA-DNA hybrid ribonucleotidohydrolase, EC 3.1.4.34) activities separable by Sephadex G-100 gel filtration were identified in lysates of Moloney murine sarcoma-leukemia virus (MSV). The larger enzyme, which we have called RNase H-I, represented about 10% of the RNase H activity in the virion. RNase H-I (i) copurified with RNA-directed DNA polymerase from the virus, (ii) had a sedimentation coefficient of 4.4S (corresponds to an apparent mol wt of 70,000), (iii) required Mn2+ (2 mM optimum) for activity with a [3H ]poly(A) .poly(dT) substrate, (iv) eluted from phosphocellulose at 0.2 M KCl, and (v) degraded [3H]poly(A) .poly(dT) and [3H]poly(C) .poly(dG) at approximately equal rates. The smaller enzyme, designated RNase H-II, which represented the majority of the RNase H activity in the virus preparation, was shown to be different since it (i) had no detectable, associated DNA polymerase activity, (ii) had a sedimentation coefficient of 2.6S (corresponds to an apparent mol wt of 30,000), (iii) preferred Mg2+ (10 to 15 mM optimum) over Mn2+ (5 to 10 mM optimum) 2.5-fold for the degradation of [3H]poly(A) .poly(dT), and (iv) degraded [3H]poly(A) .poly(dT) 6 and 60 times faster than [3H]poly(C) .poly(dG) in the presence of Mn2+ and Mg2+, respectively. Moloney MSV DNA polymerase (RNase H-I), purified by Sephadex G-100 gel filtration followed by phosphocellulose, poly(A) oligo(dT)-cellulose, and DEAE-cellulose chromatography, transcribed heteropolymeric regions of avian myeloblastosis virus 70S RNA at a rate comparable to avian myeloblastosis virus DNA polymerase purified by the same procedure.