A heterogeneous RNA fraction with properties resembling those of messenger RNA was identified in mammalian mitochondria. Synthesis of contaminating RNA of nuclear origin was suppressed by treatment with camptothecin. Labeling of the messenger-like RNA is completely inhibited by ethidium bromide, a specific inhibitor of mitochondrial functions.Although mitochondrial protein synthesis resembles that of prokaryotes in several regards, the messenger-like RNA is covalently linked to poly(adenylic acid) [poly(A)J. Poly(A) has thus far been found only in eukaryotic cells. The poly(A) segment has a gel electrophoretic mobility of about 4 S, corresponding to a length of 50-80 nucleotides, and thus resembles in size the poly(A) found in some mammalian viral RNAs. The messenger RNA can be released from the mitochondrial protein-synthesizing structure by treatment with puromycin.Mitochondria of eukaryotic cells have a distinct system of protein synthesis that is quite dissimilar from that found in the cellular cytoplasm. The ribosome-like structure of mitochondria is relatively small (60 S) (1-4). Mitochondrial protein synthesis is sensitive to chloramphenicol, an inhibitor of prokaryotic ribosomal function, and insensitive to cycloheximide, an inhibitor of eukaryotic protein synthesis. NFormyl-methionine has been found in mitochondria and is presumed to initiate polypeptide synthesis as in bacteria (5, 6).These properties of mitochondrial protein synthesis suggested a similarity to prokaryotic rather than eukaryotic mechanisms, and there has been speculation about a possible origin of mitochondria in a primordial prokaryotic symbiont.In this report, we describe an RNA species synthesized in mitochondria with properties that suggest it serves as messenger RNA for mitochondrial protein synthesis. Surprisingly, this RNA contains polyadenylate segments, which have, so far, been found only in the messenger RNA of eukaryotic cells (7)(8)(9)(10)(11) Analysis of Total Mitochondrial RNA. Cellular extracts were prepared and analyzed as described (13). Briefly, cells were washed and then suspended in 1 ml of RSB buffer [10 mM NaCl-1.5 mM MgCl2-10 mM Tris* HCO (pH 7.4)] before they were broken in a Dounce homogenizer. Nuclei were removed by centrifugation at 800 X g for 2 min. The supernatant was again centrifuged at 7700 X g for 8 min. This pellet (mitochondrial fraction) was resuspended in sodium dodecyl sulfate (SDS) buffer and extracted by the hot phenol-SDS method (14). The RNA was analyzed by electrophoresis on 2.7% acrylamide gels for 3.5 hr at 7.5 V/cm. Gels were fractionated as described (15).Analysis of Poly(A)-Containing RNA. Mitochondrial RNA was labeled in the presence of camptothecin, and a crude mitochondrial fraction was prepared. Mitochondria were suspended in MSB buffer [100 mM NaCl-10 mM MgCl2-10 mM Tris*HCl (pH 7.4)] and lysed with 0.5% sodium deoxycholate-0.5% Brij 58. (Brij 58 was obtained from the Hercules Powder, Co.) The lysed mitochondria were layered on a 15-30% MBS-sucrose gradients and centrifuged ...