RNA-seq datasets of field soybean cultures conditioned by Elice16Indures® biostimulator

Decsi, Kincső; Kutasy, Barbara; Kiniczky, Márta; Hegedűs, Géza; Virág, Eszter

doi:10.1016/j.dib.2022.108182

Cited by 6 publications

(12 citation statements)

References 12 publications

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“…Sample collection and storage were performed as described earlier by Decsi et. al [6] . The four repetitions of each sample were pooled and sequenced by third-party Xenovea Ltd, Szeged, Hungary.…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 98%

“…AnnotationTable including functional annotation of the entire de novo transcriptome was performed with Gene Ontology (GO) analyses using OmicsBox.BioBam (v2.0) [14] as detailed by Decsi et al. 2022 [6] . In this step, due to the shallow sequencing, the Blastx-fast with a permissive expectation value of 1 was used…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

“…The BioProject can be found under the accession: PRJNA807844 . To increase sequencing depths and specify the total number of genes found to be expressed, or differentially expressed we used a combined read set of the presented and earlier reported SRA reads of soybean [6] to create a reference transcript dataset containing 3964 contigs (see DOI: 10.17632/pv2vn2v6bd.2 ), Glycine_max_flower_Trinity.fasta) GO annotation of the entire reference transcript dataset is presented in the AnnotationTable (see DOI: 10.17632/pv2vn2v6bd.2 ), Glycine_max_flower_AnnotationTable.txt). DEGs of the four reproductive stages and one vegetative stage samples ( Table 1 ) were determined based on the transcript abundancies presented in the CountTable (DOI: 10.17632/pv2vn2v6bd.2 , Glycine_max_flower_CountTable.txt).…”

Section: Data Descriptionmentioning

confidence: 99%

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Transcriptome profiling dataset of different developmental stage flowers of soybean (Glycine max)

et al. 2022

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Section: Experimental Design Materials and Methodsmentioning

confidence: 98%

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

Section: Data Descriptionmentioning

confidence: 99%

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Transcriptome profiling dataset of different developmental stage flowers of soybean (Glycine max)

et al. 2022

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“…Biobam software was practiced as described in our previous publication by Decsi et al. [11] . The GO categories of upregulated genes were symbolized by WordCloud based on GO IDs Fisher score algorithm.…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

Time-course gene expression profiling data of Triticum aestivum treated by supercritical CO2 garlic extract encapsulated in nanoscale liposomes

Kutasy

Decsi

Kiniczky³

et al. 2022

Data in Brief

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“…AnnotationTable including functional annotation of the entire de novo transcriptome (based on gene level) was performed with GO analyses using OmicsBox.BioBam (v2.0) as detailed by Decsi et al 2022 [ 77 ]. In this step, the Blastx-fast with a permissive expectation value of 1 was used.…”

Section: Methodsmentioning

confidence: 99%

Liposomal Formulation of Botanical Extracts may Enhance Yield Triggering PR Genes and Phenylpropanoid Pathway in Barley (Hordeum vulgare)

Hegedűs

Kutasy

Kiniczky³

et al. 2022

Plants

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This work aimed to study the plant conditioning effect and mode of action of a plant-based biostimulant used in organic farming. This new generation plant biostimulant, named ELICE16INDURES®, is rich in plant bio-active ingredients containing eleven supercritical botanical extracts encapsulated in nano-scale liposomes. The dose–response (10 to 240 g ha−1) relationship was tested in a field population of autumn barley (Hordeum vulgare) test crop, and underlying molecular mechanisms were studied. Applying nanotechnology, cell-identical nanoparticles may help the better uptake and delivery of active ingredients increasing resilience, vitality, and crop yield. The amount of harvested crops showed a significant increase of 27.5% and 39.9% interconnected to higher normalized difference vegetation index (NDVI) of 20% and 25% after the treatment of low and high dosages (20 and 240 g ha−1), respectively. Illumina NextSeq 550 sequencing, gene expression profiling, and KEGG-pathway analysis of outstanding dosages indicated the upregulation of pathogenesis-related (PR) and other genes—associated with induced resistance—which showed dose dependency as well.

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RNA-seq datasets of field soybean cultures conditioned by Elice16Indures® biostimulator

Cited by 6 publications

References 12 publications

Transcriptome profiling dataset of different developmental stage flowers of soybean (Glycine max)

Transcriptome profiling dataset of different developmental stage flowers of soybean (Glycine max)

Time-course gene expression profiling data of Triticum aestivum treated by supercritical CO2 garlic extract encapsulated in nanoscale liposomes

Liposomal Formulation of Botanical Extracts may Enhance Yield Triggering PR Genes and Phenylpropanoid Pathway in Barley (Hordeum vulgare)

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