In this paper, a tracking controller based on a non‐integer sliding surface is proposed for a magneto‐electro‐elastic (MEE) fluid‐conveying microtube robot. The smart/adaptive MEE material enables us to control the robot with no need for external sensors and actuators. The micro‐robot lateral motion is modeled by Euler–Bernoulli beam equations. The governing equation of the robot is derived using the constitutive equations of MEE materials and Maxwell's principle followed by Hamilton's variational method. Based on the extracted dynamic model, a novel non‐integer order sliding mode controller is introduced to suppress the microtube vibration and to provide robust path following for the robot tip. This control approach is compatible with the parameter‐varying nature of the robot dynamics. Theoretical analyses, based on Lyapunov theory, are also conducted to verify the stability of the closed‐loop system. Comparative simulations are finally performed to show the efficiency of the proposed system in comparison with the conventional micro tubes made of smart materials and with an integer order sliding mode controller (SMC). The results demonstrate that the proposed robot properly meets the performance requirements in terms of vibration suppression and trajectory tracking, even in the presence of disturbances.