In this study, to reduce the impact that permanent magnet linear synchronous motor (PMLSM) servo system on the sensitivity of external and internal interferences, an adaptive super-twisting-based nonsingular fast terminal sliding mode control (AST-NFTSMC) scheme is put forward. First of all, the mathematical model of PMLSM contains uncertainties is set up, and the control law is established to make position signal converge to given state asymptotically. Second, by introducing the super-twisting algorithm, the chattering caused by nonlinear switching function in traditional method is weakened. However, in actual industrial situations, it is difficult to determine the boundary of lumped disturbance, which makes the switching gains in super-twisting algorithm cannot be accurately selected. Therefore, an adaptive law is introduced to adjust the switching gains online, so that the gains can be dynamically adjusted within a limited range during operation, so as to further weaken chattering. Finally, the practicability of AST-NFTSMC is proved in theory and verified by system experiments. The experimental results prove that AST-NFTSMC can significantly weaken chattering, and result in robust control performance.