Today, most manufacturing control systems are complex and expensive, so they are limited to employ a small number of function evaluations for optimal design. Yet, looking for optimization methods with the less-computational cost is an open issue in engineering control systems. This paper aims to propose an effective adaptive optimization approach by integrating Kriging surrogate and Particle Swarm Optimization (PSO). In this method, a novel iterative adaptive approach is utilized using two sets of training samples including initial training and adaptive sample points. The initial training points are designed by space-filling design, while the adaptive points are generated using a new jackknife resampling approach. The proposed approach can effectively convergence towards the global optimal point using a small number of function evaluations. The efficiency and applicability of the proposed algorithm are evaluated using the optimal design of the fractional-order PID (FOPID) controller for some benchmark transfer functions. Then, the introduced approach is applied for tuning the parameters and the sensitivity analysis of the FOPID controller for a dynamic production-inventory control system. The results are in good agreement with the results reported in the literature, while the proposed approach is executed with a lower computational burden.