Sir2 NAD + -dependent protein deacetylases are implicated in a variety of cellular processes such as apoptosis, gene silencing, life-span regulation, and fatty acid metabolism. In spite of this, there have been relatively few investigations into the detailed chemical mechanism. Sir2 proteins (sirtuins) catalyze the chemical conversion of NAD + and acetylated-lysine to nicotinamide, deacetylatedlysine, and 2'-O-acetyl-ADP-ribose (OAADPr). In this study, Sir2-catalyzed reactions are shown to transfer an 18 O-label from the peptide acetyl group to the ribose 1'-position of OAADPr, providing direct evidence for the formation of a covalent α-1'-O-alkylamidate, whose existence is further supported by the observed methanolysis of the α-1'-O-alkylamidate intermediate to yield β-1'-Omethyl-ADP-ribose in a Sir2 histidine-to-alanine mutant. This conserved histidine (His-135 in HST2) activates the ribose 2'-hydroxyl for attack on the α-1'-O-alkylamidate. The histidine mutant is stalled at the intermediate, allowing water and other alcohols to compete kinetically with the attacking 2'-hydroxyl. Measurement of the pH dependence of k cat and k cat /K m values for both wild-type and histidine-to-alanine mutant enzymes confirms roles of this residue in NAD + -binding and in generalbase activation of the 2'-hydroxyl. Also, transfer of an 18 O-label from water to the carbonyl oxygen of the acetyl group in OAADPr is consistent with water addition to the proposed 1'-2'cyclic intermediate formed after 2'-hydroxyl attack on the α-1'-O-alkylamidate. The effect of pH and of solvent viscosity on the k cat values suggests that final product release is rate-limiting in the wild-type enzyme. Implications of this new evidence on the mechanisms of deacetylation and possible ADPribosylation catalyzed by Sir2 deacetylases are discussed.
Keywords
SIR2; sirtuin; Deacetylation; NAD; HistoneThe growing interest in the silent information regulator 2 (Sir2 or sirtuin) family of proteins lies in their involvement in a rapidly expanding list of cellular processes including gene silencing (1,2), cell cycle regulation (3), fatty acid metabolism (4), apoptosis (5-7), and lifespan extension (8)(9)(10). Conserved among all forms of life with five homologs in yeast (ySir2 and HST1−4) and seven in humans (SIRT1−7) (11,12), most sirtuins display NAD + -dependent protein deacetylase activity (13-16). SIRT1 has received the most attention and is reported to deacetylate a growing number of substrates including 18), FOXO proteins † This work was supported by National Institutes of Health grant GM065386 (to J.M.D.) and by National Institutes of Health Biotechnology Training Grant NIH 5 T32 GM08349 (to B.C.S.). This study was also supported by the National Science Foundation grant NSF CHE-9629688 for the NMR spectrometer used. [19][20][21], and HIV Tat protein (22) suggesting its involvement in a broad range of biological processes such as glucose homeostasis, cell survival under stress, and HIV transcription. In contrast to the primarily nuclear SIRT1, SI...