Pearlmillet–chickpea cropping system (PCCS) is emerging as an important sequence in semi-arid regions of south-Asia owing to less water-requirement. However, chickpea (dry-season crop) faces comparatively acute soil moisture-deficit over pearlmillet (wet-season crop), limiting overall sustainability of PCCS. Hence, moisture-management (specifically in chickpea) and system intensification is highly essential for sustaining the PCCS in holistic manner. Since, conservation agriculture (CA) has emerged is an important climate-smart strategy to combat moisture-stress alongwith other production-vulnerabilities. Hence, current study comprised of three tillage systems in main-plots viz., Complete-CA with residue retention (CAc), Partial-CA without residue-retention (CAp), and Conventional-tillage (ConvTill) under three cropping systems in sub-plots viz., conventionally grown pearlmillet–chickpea cropping system (PCCS) alongwith two intensified systems i.e. pearlmillet-chickpea-fodder pearlmillet cropping system (PCFCS) and pearlmillet-chickpea-mungbean cropping system (PCMCS) in split-plot design. The investigation outcomes mainly focused on chickpea (dry-season crop) revealed that, on an average, there was a significant increase in chickpea grain yield under CAc to the tune of 27, 23.5 and 28.5% under PCCS, PCFCS and PCMCS, respectively over ConvTill. NPK uptake and micronutrient (Fe & Zn) biofortification in chickpea grains were again significantly higher under triple zero-tilled CAc plots with residue-retention; which was followed by triple zero-tilled CAp plots without residue-retention and the ConvTill plots. Likewise, CAc under PCMCS led to an increase in relative leaf water (RLW) content in chickpea by ~ 20.8% over ConvTill under PCCS, hence, ameliorating the moisture-stress effects. Interestingly, CA-management and system-intensification significantly enhanced the plant biochemical properties in chickpea viz., super-oxide dismuatage, ascorbate proxidase, catalase and glutathione reductase; thus, indicating their prime role in inducing moisture-stress tolerance ability in moisture-starved chickpea. Triple zero-tilled CAc plots also reduced the N2O fluxes in chickpea but with slightly higher CO2 emissions, however, curtailed the net GHG-emissions. Triple zero-tilled cropping systems (PCFCS & PCMCS) both under CAc and Cap led to a significant improvement in soil microbial population and soil enzymes activities (alkaline phosphatase, fluorescein diacetate, dehydrogenase). Overall, the PCCS system-intensification with mungbean (PCMCS) alongwith triple zero-tillage with residue-retention (CAc) may amply enhance the productivity, micronutrient biofortification and moisture-stress tolerance ability in chickpea besides propelling the ecological benefits under semi-arid agro-ecologies. However, the farmers should preserve a balance while adopting CAc or CAp where livestock equally competes for quality fodder.