Mesophilic Aeromonas spp. constitutively express a single polar flagellum that helps the bacteria move to more favorable environments and is an important virulence and colonization factor. Certain strains can also produce multiple lateral flagella in semisolid media or over surfaces. We have previously reported 16 genes ( flgN to flgL) that constitute region 1 of the Aeromonas hydrophila AH-3 polar flagellum biogenesis gene clusters. We identified 39 new polar flagellum genes distributed in four noncontiguous chromosome regions (regions 2 to 5). Region 2 contained six genes ( flaA to maf-1), including a modification accessory factor gene (maf-1) that has not been previously reported and is thought to be involved in glycosylation of polar flagellum filament. Region 3 contained 29 genes ( fliE to orf29), most of which are involved in flagellum basal body formation and chemotaxis. Region 4 contained a single gene involved in the motor stator formation (motX), and region 5 contained the three master regulatory genes for the A. hydrophila polar flagella ( flrA to flrC). Mutations in the flaH, maf-1, fliM, flhA, fliA, and flrC genes, as well as the double mutant flaA flaB, all caused loss of polar flagella and reduction in adherence and biofilm formation. A defined mutation in the pomB stator gene did not affect polar flagellum motility, in contrast to the motX mutant, which was unable to swim even though it expressed a polar flagellum. Mutations in all of these genes did not affect lateral flagellum synthesis or swarming motility, showing that both A. hydrophila flagellum systems are entirely distinct.Flagellar motility represents an important advantage for bacteria in moving toward favorable conditions or in avoiding detrimental environments, and it allows flagellated bacteria to successfully compete with other microorganisms (21). In addition, motility and flagella play a crucial role in adhesion, biofilm formation, and colonization of several pathogenic bacteria, such as Pseudomonas aeruginosa (59), Salmonella enterica (13), Escherichia coli (51), Helicobacter pylori (19), Vibrio cholerae (22), and Aeromonas hydrophila (43,53).Mesophilic Aeromonas spp. are ubiquitous waterborne bacteria and pathogens of reptiles, amphibians, and fish (5). They can be isolated as a part of the fecal flora of a wide variety of other animals, including some used for human consumption, such as pigs, cows, sheep, and poultry. In humans, Aeromonas hydrophila belonging to hybridization group 1 (HG1) and HG3, A. veronii biovar sobria (HG8/HG10), and A. caviae (HG4) have been associated with gastrointestinal and extraintestinal diseases, such as wound infections of healthy humans, and less commonly with septicemia of immunocompromised patients (30). The swimming motility of all mesophilic aeromonads has been linked to a single polar unsheathed flagellum, expressed constitutively, which is required for adherence to and invasion of human and fish cell lines (25,43,53,63). Moreover, 50% to 60% of mesophilic aeromonads are able to produce many...