Arctic cyclone activity is an important component of the local climate, and the frequent occurrence of extreme summer storms has raised widespread scientific interest. In this paper, we investigated the distinctive structural characteristics of intense summer Arctic cyclones by utilizing ERA‐Interim reanalysis data and employing a deep learning algorithm for cyclone detection. We found that the northern edge of Eurasia (i.e., the marginal ice zone (MIZ)) and the Alpha Ridge of Arctic Ocean (AR, i.e. central Arctic) are the two most active regions for intense Arctic cyclone activities in summer (from June to September). However, the surface conditions and coupling frequency between surface cyclone and tropopause polar vortices (TPVs) are distinct over these two regions. By further analysis of 100 intense cyclone activities in these two areas, respectively, we found that cyclones in MIZ are often smaller in size but higher in intensity at their maximum intensity, and their life cycles are generally shorter. MIZ cyclones are typically accompanied by a large Eady growth rate and frontal structure in the lower troposphere and their intensification primarily attributed to the thermal‐baroclinic process. In contrast, cyclones in AR are more frequently associated with higher potential vorticity (PV) values and pronounced PV downward intrusion from the stratosphere, as well as notable “upper warm‐lower cold” structures. The downward intrusion of TPVs and stratosphere vortices contribute to a decrease in the upper and column air mass deficit, leading to the intensification of surface Arctic cyclones in these regions.