Acute kidney injury (AKI) initiates a complex pathophysiological cascade leading to epithelial cell death. Recent studies identify autophagy, a key intracellular process that degrades cytoplasmic constituents, as protective against AKI. We have previously reported that the protein thrombospondin‐1 and its receptor CD47 are induced in AKI; however, the mechanism underlying their regulation of injury is unknown. Here, we investigated whether CD47 signaling affects autophagy to regulate AKI. Wild‐type (WT) and CD47‐/‐ mice were challenged with renal ischemia‐reperfusion injury. All animals underwent analysis of renal function and biomolecular phenotyping. CD47‐/‐ mice were resistant to AKI, with decreased serum creatinine and ameliorated histologic changes compared with WT animals. These mice also displayed increased abundance of key autophagy genes, including autophagy‐related gene (Atg)5, Atg7, beclin‐1, and microtubule‐associated proteins 1A/1B light chain 3 (LC3) at baseline and post‐AKI, which were significantly reduced in WT mice. Changes in protein expression correlated with increased autophagosome and autolysosome formation in renal tubular epithelial cells (RTECs). In mouse kidney transplantation, treatment with a CD47‐blocking antibody that improved function was associated with increased autophagy compared with control mice. Primary isolated RTECs from CD47‐/‐ mice demonstrated increased basal expression of several autophagy components that was preserved under hypoxic stress. These data suggest that activated CD47 promotes AKI through inhibition of autophagy and point to CD47 as a target to preserve renal function following injury.—El‐Rashid, M., Ghimire, K., Sanganeria, B., Lu, B., Rogers, N. M. CD47 limits autophagy to promote acute kidney injury. FASEB J. 33, 12735–12749 (2019). http://www.fasebj.org