Abstract-Fluorescence microscopy imaging has become one of the most useful techniques to assess the activity of individual cells, subcellular trafficking of signals to and between organelles, and to appreciate how organelle function is regulated. The past 2 decades have seen a tremendous advance in the rational design and development in the nature and selectivity of probes to serve as reporters of the intracellular environment in live cells. These probes range from small organic fluorescent molecules to fluorescent biomolecules and photoproteins ingeniously engineered to follow signaling traffic, sense ionic and nonionic second messengers, and report various kinase activities. These probes, together with recent advances in imaging technology, have enabled significantly enhanced spatial and temporal resolution. This review summarizes some of these developments and their applications to assess intracellular organelle function. Key Words: microscopy Ⅲ calcium Ⅲ redox Ⅲ mitochondria Ⅲ fluorescent proteins R esponses of single cells undergoing physiological activation processes or pathological stresses can be quite heterogeneous in time and space. Measurements of these parameters in bulk (such as in tissue or cellular suspension), using conventional physiological and biochemical methods, can often fail to resolve discrete differences in the kinetics and magnitudes of the responses between cells, as well as complex intracellular and subcellular dynamical processes, critical to understanding how cells actually work. For example, during embryonic development or periods of environmental stress, the decision for a certain cell to undergo apoptosis may be triggered in a moment and distinct from its neighbors, the resulting intracellular processes may proceed along a more or less protracted time frame, and these events may occur heterogeneously among (and inside) other cells. Yet, bulk measures of the progression of apoptosis, such as by DNA-laddering, although undeniably valuable, would show only the overall slow progression with time. All-ornone phenomenon occurring in discrete organelles, such as the mitochondrial permeability transition (MPT), appears as a graded response when examined in bulk suspensions of cells or mitochondria. Similar arguments can be made for resolving questions of Ca 2ϩ signaling and gene expression. Ca and, unless they are synchronized (such as in the beating heart), their occurrence or nature (eg, frequency, amplitude, etc) might not be apparent from ensemble measurements. Significant information about these processes would obviously need to use a single cells studies. Currently, one of the most useful techniques to assess the activities of individual cells, subcellular trafficking of signals to and between organelles, and to appreciate how organelle function is regulated is based on fluorescence microscopy imaging. Each of the various imaging techniques requires that the signaling molecule(s), compartment(s), or organelle(s) be labeled in a specific fashion such that they can be tracked in time...