Although the role of macromolecular interactions in cell function has attracted considerable attention, important questions about the organization of cells remain. To help clarify this situation, we used a simple protocol that measures macromolecule release after gentle permeabilization for the examination of the status of endogenous macromolecules. Treatment of Chinese hamster ovary cells with saponin under carefully controlled conditions allowed entry of molecules of at least 800 kDa; however, there were minimal effects on internal cellular architecture and protein synthesis remained at levels comparable to those seen with intact cells. Most importantly, total cellular protein and RNA were released from these cells extremely slowly. The release of actin-binding proteins and a variety of individual cytoplasmic proteins mirrored that of total protein, while marker proteins from subcellular compartments were not released. In contrast, glycolytic enzymes leaked rapidly, indicating that cells contain at least two distinct populations of cytoplasmic proteins. Addition of microfilament-disrupting agents led to rapid and extensive release of cytoplasmic macromolecules and a dramatic reduction in protein synthesis. These observations support the conclusion that mammalian cells behave as highly organized, macromolecular assemblies (dependent on the actin cytoskeleton) in which endogenous macromolecules normally are not free to diffuse over large distances.Tremendous progress has been made in our understanding of cell function. For the most part, this has been accomplished through the use of a traditional reductionist approach in which individual cellular components are identified and isolated and their cellular roles are reconstructed on the basis of their functions in vitro. While such an approach has proven to be highly successful, especially for determining the "players" in cell metabolism, it falls short in explaining how these components actually function within the cell. In fact, in many cases, particularly those involving complex cellular processes, it often has not been possible to recreate the efficiency of cellular reactions in vitro. Understanding what accounts for such differences in efficiency is essential if we are to explain cellular function in its entirety.In recent years, considerable attention has focused on the importance of macromolecular interactions in cell function (see, e.g., reference 10) and on the fact that enzymes contributing to complex processes often are bound to each other and that intermediates in the process may be channeled (see, e.g., references 6 and 16 and the review in reference 19). As a consequence of such organization, processes within cells may be able to proceed much more efficiently than those carried out by the same enzymes dispersed in solution in vitro. Thus, important questions that remain to be answered are (i) how extensive is cellular organization, (ii) what cellular components are responsible for maintaining it, and (iii) are macromolecular interactions confined to i...