Staphylococcal ␣-hemolysin (␣HL) forms a heptameric pore that features a 14-stranded transmembrane -barrel. We attempted to force the ␣HL pore to adopt novel stoichiometries by oligomerizing subunit dimers generated by in vitro transcription and translation of a tandem gene. However, in vitro transcription and translation also produced truncated proteins, monomers, that were preferentially incorporated into oligomers. These oligomers were shown to be functional heptamers by single-channel recording and had a similar mobility to wildtype heptamers in SDS-polyacrylamide gels. Purified full-length subunit dimers were then prepared by using His-tagged protein.Again, single-channel recording showed that oligomers made from these dimers are functional heptamers, implying that one or more subunits are excluded from the central pore. Therefore, the ␣HL pore resists all structures except those that possess seven subunits immediately surrounding the central axis. Although we were not able to change the stoichiometry of the central pore of ␣HL by the concatenation of subunits, we extended our findings to prepare pores containing one subunit dimer and five monomers and purified them by SDS-PAGE. Two half-chelating ligands were then installed at adjacent sites, one on each subunit of the dimer. Single-channel recording showed that pores formed from this construct formed complexes with divalent metal ions in a similar fashion to pores containing two half-chelating ligands on the same subunit, confirming that the oligomers had assembled with seven subunits around the central lumen. The ability to incorporate subunit dimers into ␣HL pores increases the range of structures that can be obtained from engineered protein nanopores.
Protein pores have been devised for a variety of applications (1-3). For example, ␣-hemolysin (␣HL)3 from Staphylococcus aureus has been developed for the controlled permeabilization of cells (4, 5), stochastic sensing (6), nucleic acid detection and sequencing (7,8), the examination of single molecule chemistry (9), and the construction of "prototissues" based on droplets connected by bilayers (10, 11). To approach these goals, engineered ␣HL pores are essential, and they have been prepared by site-directed mutagenesis with natural and unnatural amino acids and by both noncovalent and covalent chemical modification (12, 13). The wild-type (WT) ␣HL pore is a homoheptamer (14, 15), and engineered pores have been prepared in both homo-and heteroheptameric form (12). However, in the case of heteromers, the permutation of the subunits around the central axis of the pore has not been controlled. For example, where two of the seven subunits have been altered, there are three possible permutations (Fig. 1A) (16). One goal of the present study was to demonstrate such control.The staphylococcal ␣HL pore contains a 14-stranded -barrel that spans the lipid bilayer (15). Two strands are contributed by each of the seven subunits. Under certain conditions, a fraction of the pores may be hexamers (17). By contrast, th...