Members of the pPT23A plasmid family of Pseudomonas syringae play an important role in the interaction of this bacterial pathogen with host plants. Complete sequence analysis of several pPT23A family plasmids (PFPs) has provided a glimpse of the gene content and virulence function of these plasmids. We constructed a macroarray containing 161 genes to estimate and compare the gene contents of 23 newly analyzed and eight known PFPs from 12 pathovars of P. syringae, which belong to four genomospecies. Hybridization results revealed that PFPs could be distinguished by the type IV secretion system (T4SS) encoded and separated into four groups. Twelve PFPs along with pPSR1 from P. syringae pv. syringae, pPh1448B from P. syringae pv. phaseolicola, and pPMA4326A from P. syringae pv. maculicola encoded a type IVA T4SS (VirB-VirD4 conjugative system), whereas 10 PFPs along with pDC3000A and pDC3000B from P. syringae pv. tomato encoded a type IVB T4SS (tra system). Two plasmids encoded both T4SSs, whereas six other plasmids carried none or only a few genes of either the type IVA or type IVB secretion system. Most PFPs hybridized to more than one putative type III secretion system effector gene and to a variety of additional genes encoding known P. syringae virulence factors. The overall gene contents of individual PFPs were more similar among plasmids within each of the four groups based on T4SS genes; however, a number of genes, encoding plasmid-specific functions or hypothetical proteins, were shared among plasmids from different T4SS groups. The only gene shared by all PFPs in this study was the repA gene, which encoded sequences with 87 to 99% amino acid identity among 25 sequences examined. We proposed a model to illustrate the evolution and gene acquisition of the pPT23A plasmid family. To our knowledge, this is the first such attempt to conduct a global genetic analysis of this important plasmid family.The species Pseudomonas syringae comprises a group of plant-associated bacteria that act either as epiphytes or as plant pathogens causing important diseases with significant economic consequences (35). Although the P. syringae species as a whole causes plant diseases on a multitude of agriculturally important plant species, individual P. syringae strains typically have a more limited host range (3,25,35). In the past decade, significant progress in unveiling the mechanisms of pathogenesis of P. syringae and other plant pathogens has been made (3,9,36,51). With either complete or draft sequences of three P. syringae pathovars currently available, this organism is an attractive model for molecular studies of plant-pathogen interactions (9, 10). A functional hypersensitive response and pathogenicity (hrp pathogenicity island [PAI]) type III secretion system (TTSS) that directs the delivery of effector proteins into host cells has been shown to be the key pathogenicity factor required for P. syringae to colonize and parasitize host plants (3,9,40,46,51). While the complete repertoire of effectors of any one P. syringae s...