Attenuated strains of vaccinia virus (VV) were developed in response to the need for safer vaccines (37). NYVAC is a derivative of the VV Copenhagen strain in which 18 open reading frames were specifically deleted from the parental viral genome; genes involved in host range, virulence, and pathogenesis were thus lost (49). NYVAC-derived vectors are able to express antigens from a wide range of species (50). A number of examples have been reported, using NYVAC as a recombinant vaccine delivery system against pathogens and tumors (5,10,31,46). Clinical trials using NYVAC-based vectors show a good safety profile, with induction of high levels of immunity against heterologous antigens (24, 34).Since phase I/II clinical trials using this vector are currently under way, particularly for human immunodeficiency virus type 1 (HIV-1) (www.eurovacc.org), it is essential to obtain a comprehensive understanding of the effect of NYVAC infection on human host gene expression (34). DNA microarray technology allows monitoring of the expression of several thousand individual genes (22) and has been used to identify the differential expression of cellular genes in response to infection by several animal viruses, including VV strains WR (Western Reserve) and MVA (modified vaccinia Ankara) (15,16,29,55).Host genes that govern vital cell processes such as replication, transcription, and translation are downregulated during the course of WR infection. The expression of genes involved in apoptosis or the proteasome-ubiquitin degradation pathway is also repressed; few genes are upregulated after WR infection (15). A larger number of genes than that seen with WR is upregulated during strain MVA infection; most encode immune modulator proteins, some of which may be involved in host resistance and immune modulation during MVA infection (16). Wiskott-Aldrich syndrome protein (WASP) family members are upregulated after MVA or WR infection (15,16). This family includes the gene that codes for the N-WASP protein, implicated in the actin-mediated motility of VV as a mechanism for intercellular viral spreading (8,11). Additional studies show that WASP is required for VV pathogenesis (17). The results of microarray analysis have implicated cell signaling events and cell proteins as important regulators of VV infection.For this study, we used cDNA microarray technology to analyze host gene expression changes in HeLa cell cultures following NYVAC infection. This is the first large-scale analysis of the transcriptional response of HeLa cells to NYVAC infection. It provides a better understanding of the mechanisms of vaccine protection against VV infection and will aid in the development of NYVAC recombinant-based vaccines against pathogens and tumors.
MATERIALS AND METHODSCells, viruses, and infection conditions. HeLa cells (ATCC) were cultured in Dulbecco's medium supplemented with 10% newborn bovine serum and antibiotics. The VV WR strain was cultured in monkey BSC-40 cells, purified by sucrose gradient banding, and titrated on BSC-40 cells by a p...