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TP53, the most frequently mutated gene in human cancer, encodes a transcriptional activator that induces myriad downstream target genes. Despite the importance of p53 in tumor suppression, the specific p53 target genes important for tumor suppression remain unclear. Recent studies have identified the p53-inducible geneZmat3as a critical effector of tumor suppression, but many questions remain regarding its p53-dependence, activity across contexts, and mechanism of tumor suppression alone and in cooperation with other p53-inducible genes. To address these questions, we used Tuba-seqUltrasomatic genome editing and tumor barcoding in a mouse lung adenocarcinoma model, combinatorialin vivoCRISPR/Cas9 screens, meta-analyses of gene expression and Cancer Dependency Map data, and integrative RNA-sequencing and shotgun proteomic analyses. We establishedZmat3as a core component of p53-mediated tumor suppression and identifiedCdkn1aas the most potent cooperating p53-induced gene in tumor suppression. We discovered thatZMAT3/CDKN1Aserve as near-universal effectors of p53-mediated tumor suppression that regulate cell division, migration, and extracellular matrix organization. Accordingly, combinedZmat3-Cdkn1ainactivation dramatically enhanced cell proliferation and migration compared to controls, akin to p53 inactivation. Together, our findings placeZMAT3andCDKN1Aas hubs of a p53-induced gene program that opposes tumorigenesis across various cellular and genetic contexts.
TP53, the most frequently mutated gene in human cancer, encodes a transcriptional activator that induces myriad downstream target genes. Despite the importance of p53 in tumor suppression, the specific p53 target genes important for tumor suppression remain unclear. Recent studies have identified the p53-inducible geneZmat3as a critical effector of tumor suppression, but many questions remain regarding its p53-dependence, activity across contexts, and mechanism of tumor suppression alone and in cooperation with other p53-inducible genes. To address these questions, we used Tuba-seqUltrasomatic genome editing and tumor barcoding in a mouse lung adenocarcinoma model, combinatorialin vivoCRISPR/Cas9 screens, meta-analyses of gene expression and Cancer Dependency Map data, and integrative RNA-sequencing and shotgun proteomic analyses. We establishedZmat3as a core component of p53-mediated tumor suppression and identifiedCdkn1aas the most potent cooperating p53-induced gene in tumor suppression. We discovered thatZMAT3/CDKN1Aserve as near-universal effectors of p53-mediated tumor suppression that regulate cell division, migration, and extracellular matrix organization. Accordingly, combinedZmat3-Cdkn1ainactivation dramatically enhanced cell proliferation and migration compared to controls, akin to p53 inactivation. Together, our findings placeZMAT3andCDKN1Aas hubs of a p53-induced gene program that opposes tumorigenesis across various cellular and genetic contexts.
Integrin receptors for the extracellular matrix activate intracellular signaling pathways that are critical for tissue development, homeostasis, and regeneration/repair, and their loss or dysregulation contributes to many developmental defects and tissue pathologies. This review will focus on tissue remodeling roles for integrin α3β1, a receptor for laminins found in the basement membranes that underlie epithelial cell layers. As a paradigm, we will discuss literature that supports a role for α3β1 in promoting ability of epidermal keratinocytes to modify their tissue microenvironment during skin development, wound healing or tumorigenesis. Preclinical and clinical studies have shown that this role depends largely on ability of α3β1 to govern the keratinocyte's repertoire of secreted proteins, or the "secretome", including (1) matrix proteins and proteases involved in matrix remodeling and (2) paracrine-acting growth factors/cytokines that stimulate other cells with important tissue remodeling functions (e.g., endothelial cells, fibroblasts, inflammatory cells). Moreover, α3β1 signaling controls gene expression that helps epithelial cells carry out these functions, including genes that encode secreted matrix proteins, proteases, growth factors, or cytokines. We will review what is known about α3β1-dependent gene regulation through both transcription and post-transcriptional mRNA stability. Regarding the latter, we will discuss examples of α3β1-dependent alternative splicing or alternative polyadenylation that prevents inclusion of cis-acting mRNA sequences that would otherwise target the transcript for degradation via nonsense-mediated decay or destabilizing AU-rich elements in the 3'-UTR. Finally, we will discuss prospects and anticipated challenges of exploiting α3β1 as a clinical target for the treatment of cancer or wound healing.
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