The main objectives of the study were to determine the trophic response of the temperate reservoir to seasonal and interannual variabilities of monsoon inorganic solids and nutrients along the gradients of the morphologically complex Asian reservoir using long-term datasets between 2000–2018. Nutrient regime (total nitrogen—TN, total phosphorus—TP), total suspended solids (TSS), and chlorophyll-a (CHL-a) were primarily affected by an intensity of summer monsoon and the longitudinal structure of riverine (Rz), transitional (Tz), and lacustrine (Lz) zone. The reservoir is a nitrogen-rich system and the phosphorus content of the water was relatively low, and it had low mean N:P ratios (<40), implying a P-limiting system. The Lz was a highly P-limited zone in comparison to Rz and Tz zone during both drought (2015) and flood year (2011). The TP content was higher in the mainstem (S3) than the embankment (S4 and S6) of the reservoir due to the monsoon river inputs of the nutrients. Nonparametric Mann–Kendall tests indicated that TP decreased over the long-term years in the Rz, while it did not show any trend in Tz, Lz, IT1, and IT2. TN showed an increasing trend in Rz, Tz, Lz, and IT2 except for IT1. The empirical regression model for chlorophyll nutrients showed that CHL-a had a strong positive relationship with TP (R2 = 0.67, p < 0.01) than TN (R2 = 0.06, p < 0.01), supporting the view that algal growth in lentic systems responds to TP enrichment and TP may provide a reliable basis for predicting algal biomass. The seasonality of CHL-a and TP showed a monomodal pattern and indicates that summer TP influences summer algal growth in Tz, Lz, and IT2. The water clarity (SD) of the reservoir was significantly (p < 0.01) influenced by TP (R2 = 0.62), TSS (R2 = 0.67), and CHL-a (R2 = 0.68) rather than TN (R2 = 0.10). The non-algal light attenuation coefficient (Kna) was determined mainly by suspended solids and the monsoon hydrology. The trophic state was much higher when assessments were based on TSI (CHL-a) than on TSI (TP) and TSI (SD). TSI (CHL-a) indicated the eutrophic state of the reservoirs except for the zone of Lz during the premonsoon season. Analysis of trophic state index deviation (TSID) suggested that the blue-green algae dominated the algal community, and the effects of non-algal turbidity and zooplankton grazing were minor in the reservoir.