Recent studies suggest that dysfunction of the NADH-quinone oxidoreductase (complex I) is associated with a number of human diseases, including neurodegenerative disorders such as Parkinson disease. We have shown previously that the single subunit rotenone-insensitive NADH-quinone oxidoreductase (Ndi1) of Saccharomyces cerevisiae mitochondria can restore NADH oxidation in complex I-deficient mammalian cells. The Ndi1 enzyme is insensitive to complex I inhibitors such as rotenone and 1-methyl-4-phenylpyridinium ion, known as a metabolite of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). To test the possible use of the NDI1 gene as a therapeutic agent in vivo, we chose a mouse model of Parkinson disease. The NDI1-recombinant adeno-associated virus particles (rAAV-NDI1) were injected unilaterally into the substantia nigra of mice. The animals were then subjected to treatment with MPTP. The degree of neurodegeneration in the nigrostriatal system was assessed immunohistochemically through the analysis of tyrosine hydroxylase and glial fibrillary acidic protein. It was evident that the substantia nigra neurons on the side used for injection of rAAV-NDI1 retained a high level of tyrosine hydroxylase-positive cells, and the ipsilateral striatum exhibited significantly less denervation than the contralateral striatum. Furthermore, striatal concentrations of dopamine and its metabolites in the hemisphere that received rAAV-NDI1 were substantially higher than those of the untreated hemisphere, reaching more than 50% of the normal levels. These results indicate that the expressed Ndi1 protein elicits resistance to MPTP-induced neuronal injury. The present study is the first successful demonstration of complementation of complex I by the Ndi1 enzyme in animals.The mammalian proton-translocating NADH-quinone oxidoreductase (complex I) 4 is located in the inner mitochondrial membranes, is composed of 46 different subunits, and bears one FMN and eight ironsulfur clusters as cofactors (1-3). It has been known for many years that the structural and functional defects of this enzyme complex are involved in a number of human mitochondrial diseases (4 -6). Therefore, it is expected that a strategy to reestablish the function of complex I would lead to the treatment of human diseases caused by the defects of this enzyme complex. The respiratory chain of certain organisms in bacteria and fungi, but not in mammals, lacks the complex I-type enzyme. Instead, the functionality of complex I, namely oxidation of NADH and reduction of quinone, is performed by structurally simpler alternatives (collectively called NDH-2). Therefore, a simple question was asked: can the NDH-2-type enzyme be implemented in mammalian mitochondria, and can it supplement malfunctioning complex I? As a therapeutic method that works irrespective of the cause of complex I deficiencies, we have proposed using the Ndi1 protein, which is one of the NDH-2-type enzymes, found in the mitochondria of Saccharomyces cerevisiae (7-12). The Ndi1 enzyme is composed of a ...