Glycoprotein IIb/IIIa (GPIIb/IIIa) is the most abundant platelet surface receptor for fibrinogen and von Willebrand factor. Polymorphism PlA1/A2 in the gene of GPIIb/IIIa is among the risk factors for the development of arterial and venous thrombosis. The aim of this study is to evaluate the effect of the carriage of PlA1/A2 on the size, topographic features, and membrane stiffness of platelets from healthy controls and patients with deep venous thrombosis (DVT). Atomic force microscopy (AFM) imaging and nanoindentation (force-distance curves) were applied to investigate the morphological and nanomechanical properties (Young's modulus) of platelets immobilized on glass surface. The surface roughness (R a ) and height (h) of platelets from patients with DVT, carriers of mutant allele PlA2 (R a ¼ 30.2 + 6 nm; h ¼ 766 + 182 nm) and noncarriers (R a ¼ 28.6 + 6 nm; h ¼ 865 + 290 nm), were lower than those of healthy carriers of allele PlA2 (R a ¼ 48.1 + 12 nm; h ¼ 1072 + 338 nm) and healthy noncarriers (R a ¼ 49.7 + 14 nm; h ¼ 1021 + 433 nm), respectively. Platelets isolated from patients with DVT, both carriers and noncarriers, exhibit much higher degree of stiffness at the stage of spreading (E ¼ 327 + 85 kPa and 341 + 102 kPa, respectively) compared to healthy noncarriers (E ¼ 198 + 50 kPa). In addition, more pronounced level of platelet activation was found in polymorphism carriers. In conclusion, the carriage of PlA2 allele modulates the activation state, morphology, and membrane elasticity of platelets.