Due to widely use of iron in all kinds of areas, the design and construction of direct, fast, and highly sensitive sensor for Fe3+ is highly desirable and important. In the present work, a kind of fluorescent MQDs were synthesized via an intermittent ultrasound process with N,N-dimethyl formamide as solvent. The prepared MQDs were characterized via a combination of UV-Vis absorption, fluorescence spectra, X-ray photoelectron energy spectra, and Fourier transform infrared spectroscopy. Based on the electrostatic induced aggregation quenching mechanism, the fluorescent MQDs probes exhibited excellent sensing performance for the detection of Fe3+, with a sensitivity of 0.6377 mM− 1 and the detection limit of 1.4 µM, superior to those reported in literatures. The present MQDs-based probes demonstrate potential promising applications as the sensing device of Fe3+.