Uracil, thymine, and 5‐fluorouracil (5‐FU) have been ferrocenoylated selectively at the N1 position. Deprotonated pyrimidine nucleobases, prepared with sodium hydride (NaH) in N,N‐dimethylformamide (DMF), reacted with either ferrocenoyl chloride (FcCOCl) or ferrocenoyl ethyl carbonate (FcCOOCOOEt), in DMF to give a single product. The regioselectivity of these reactions were analyzed in detail by using NMR spectroscopy and quantum chemical calculations. The 1H and 19F NMR spectra of reaction mixtures, and 13C NMR and 2D NOESY spectra of products, confirmed the formation of the N1‐isomer only. The calculated energy barrier for acetylation at the N3‐position is significantly higher (> 40 kJ/mol), which suggests that the analogous reaction at the N1‐position is kinetically controlled. The nucleophilic addition of pyrimidine bases to the carbonyl group of FcCOCl proceeds through a concerted SN2‐like mechanism with the absence of the generally assumed tetrahedral intermediate.