2020
DOI: 10.1016/j.aquaculture.2020.735539
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Salinity and fish age affect the gut microbiota of farmed Chinook salmon (Oncorhynchus tshawytscha)

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Cited by 59 publications
(49 citation statements)
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“…The disease developed after the juvenile salmon (approximately one-year-old) were moved from freshwater to saltwater, pointing to a possible role of the change in salinity in triggering the Tenacibaculosis in accordance with previous studies describing changes in sh skin and gut microbiome in response to change in salinity [82]- [85].…”
Section: Discussionsupporting
confidence: 88%
See 1 more Smart Citation
“…The disease developed after the juvenile salmon (approximately one-year-old) were moved from freshwater to saltwater, pointing to a possible role of the change in salinity in triggering the Tenacibaculosis in accordance with previous studies describing changes in sh skin and gut microbiome in response to change in salinity [82]- [85].…”
Section: Discussionsupporting
confidence: 88%
“…in salmonids and other sh gut has not been possible using culture-based methods. Since the introduction of culture-free methods for microbiome investigations, such as shotgun metagenomics and target-gene amplicon sequencing, Mycoplasma species have been more often reported in salmonid gut samples, including commercially relevant species such as Atlantic salmon[26], [89], [92]-[95], Chinook salmon[85],[96], and Rainbow trout [97]-[101], often accounting for the majority of the sequenced reads. Speci cally, it has been observed that Mycoplasma spp.…”
mentioning
confidence: 99%
“…Vibrio tapetis is expected to be an opportunistic species, taking advantage of the weakened immune system of the host to expand, as previously observed in another study [62]. The disease developed after the juvenile salmon (approximately one-year-old) were moved from freshwater to saltwater, pointing to a possible role of the change in salinity in triggering the Tenacibaculosis, in accordance with previous studies describing changes in sh skin and gut microbiome in response to change in salinity [74]- [77].…”
Section: Discussionsupporting
confidence: 88%
“…in salmonids and other sh gut has not been possible using culture-based methods. Since the introduction of culture-free methods for microbiome investigations, such as shotgun metagenomics and target-gene amplicon sequencing, Mycoplasma species have been more often reported in salmonid gut samples, including commercially relevant species such as Atlantic salmon [20], [81], [84]- [87], Chinook salmon [77], [88], and Rainbow trout [89]- [93], often accounting for the majority of the sequenced reads. Speci cally, it has been observed that Mycoplasma spp.…”
Section: Discussionmentioning
confidence: 99%
“…A potential barrier to the use of microbiome manipulations for sustainable aquaculture is that a signi cant proportion of host-associated bacteria have never been identi ed, in our study and others [15,17,[103][104][105]. For example, one ASV from our study could only be taxonomically ascribed with con dence at the Kingdom level, yet it accounted for > 30% of the total abundance of the microbes in some sh populations.…”
Section: Microbiomes and The Sustainable Development Of Aquaculturementioning
confidence: 65%