Many fundamental questions about sleep remain unanswered. The presence of sleep across phyla suggests that it must serve a basic cellular and/or molecular function. Microarray studies, performed in several model systems, have identified classes of genes that are sleep-state regulated. This has led to the following concepts: first, a function of sleep is to maintain synaptic homeostasis; second, sleep is a stage of macromolecule biosynthesis; third, extending wakefulness leads to downregulation of several important metabolic pathways; and, fourth, extending wakefulness leads to endoplasmic reticulum stress. In human studies, microarrays are being applied to the identification of biomarkers for sleepiness and for the common debilitating condition of obstructive sleep apnea.
High-throughput approaches to study gene expressionThe search for genes involved in regulation by, and of, sleep and wakefulness and the quest to understand the functions of sleep at the molecular level began a decade before the advent of microarrays. Several candidate genes were studied to elucidate their roles in sleep and wakefulness (for a review, see [1]). Subtractive hybridization carried out on brain mRNA from sleep-deprived rats, performed in the early 1990s, was the first 'high-throughput' attempt to identify such genes [2]. Later, the application of differential display [3] broadened the candidate gene and subtractive hybridization approaches to screen for genes whose functions were poorly characterized or previously unknown.As a result of sequencing efforts, there has been an exponential growth in the amount of information available about the DNA sequence of the human genome (e.g., see [4]) as well as the genomes of various model organisms (e.g., see [5,6]). Consequently, thousands of genes have been discovered, including many novel genes for which sequences were unavailable previously. The role of many of these genes is unknown. This facilitated the advent of microarray approaches.A microarray contains tens of thousands of genes and is a tool for simultaneous measurement of their expression. Significant advances in gene annotations, progress in development and © 2008 Elsevier Ltd. All rights reserved.Corresponding author: Pack, A.I. (pack@mail.med.upenn.edu). Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
NIH Public Access
Microarrays in sleep researchMicroarrays offer a new window on the difference between the sleeping and awake brain and hold the promise of facilitating answers to some of the major questions in sleep biology (Box 1; see also [9][10][11]).These questions are releva...