Pt-supported SPEEK (sulfonated poly(ether ether ketone)) thin films, mimicking the ionomer−electrode interface in polymer electrolyte fuel cells (PEFCs), were synthesized with thicknesses from 12 to 105 nm. Their glass transition temperature (T g ) was analyzed via in situ thermal ellipsometry, revealing a thickness-dependent decrease in T g , indicative of confinement effects. Particularly, a 30 nm film, typical of practical ionomer films, exhibited surface crystallization preceding that at the buried interface, a phenomenon linked to higher mobility at the free surface, as confirmed by grazing incidence wide-angle X-ray scattering (GIWAXS) at both subcritical (0.09°) and supercritical (0.14°) angles. This study elucidates the dynamic interplay between the high-mobility-free surface and the interaction-intensive buried interface in confined SPEEK thin films. It was observed that below 30 nm thickness, interfacial interactions become the primary factor influencing transition temperature. Additionally, spatially heterogeneous crystallization, more pronounced in the outof-plane direction, correlates with reduced proton conduction, underscoring the impact of membrane electrolyte assembly (MEA) hot-pressing on the functional properties of Nafion alternatives.