2006
DOI: 10.1111/j.1471-8286.2006.01522.x
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genclone: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization

Abstract: GENCLONE 1.0 is designed for studying clonality and its spatial components using genotype data with molecular markers from haploid or diploid organisms. GENCLONE 1.0 performs the following tasks. (i) discriminates distinct multilocus genotypes (MLGs), and uses permutation and resampling approaches to test for the reliability of sets of loci and sampling units for estimating genotypic and genetic diversity (a procedure also useful for nonclonal organisms); (ii) computes statistics to test for clonal propagation… Show more

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Cited by 827 publications
(391 citation statements)
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“…The number of different multilocus genotypes was estimated using the software Genclone (Arnaud-Haond and Belkhir, 2007). Relationships between the seventh most frequent genotypes in the total sample (see Results) were estimated using the shared allele distance (DAS, Chakraborty and Jin, 1993) and the software Population (Langella, 2002).…”
Section: Resultsmentioning
confidence: 99%
“…The number of different multilocus genotypes was estimated using the software Genclone (Arnaud-Haond and Belkhir, 2007). Relationships between the seventh most frequent genotypes in the total sample (see Results) were estimated using the shared allele distance (DAS, Chakraborty and Jin, 1993) and the software Population (Langella, 2002).…”
Section: Resultsmentioning
confidence: 99%
“…We first checked for the presence of repeated (clonal) multilocus genotypes (MLGs), verifying that the set of loci used permits as a good estimate of the real number of MLGs. To describe the clonal structure of each population, we reported several standard measures obtained with the program GENCLONE (Arnaud-Haond and Belkhir, 2007) …”
Section: Clonal Structure and Genetic Diversity Analysismentioning
confidence: 99%
“…The slope (b) of the Pareto distribution, describing the distribution of ramets within genets (see Arnaud-Haond et al, 2007a for details), and sensitive to the presence or absence of dominant clonal lineages is also provided, as well as the Simpson's Index (Pielou, 1969), an index of diversity sensitive to dominant entities. Clonal discrimination and estimations of the parameters of clonal diversity and structure were performed with Genclone 2.1 (Arnaud-Haond and Belkhir, 2007).…”
Section: Genetic and Clonal Data Analysismentioning
confidence: 99%