Mouse oocytes mature from the germinal vesicle (GV) to meiosis II (MII) stage and are fertilized by a single sperm. After fertilization, the embryo degrades parts of the maternal components via lysosomal degradation systems, including autophagy and endocytosis, as zygotic gene expression begins during embryogenesis. Here, we demonstrate that endosomal-lysosomal organelles form assembly structures (ELYSAs) in the periphery of the oocyte plasma membrane. Small ELYSA structures appeared in GV oocytes and combined to form large structures in MII oocytes. The ELYSA forms a large spherical structure with tubular-vesicular structures approximately 2–10 μm in diameter and includes cytosolic components at the MII stage. After fertilization, ELYSA structures are gradually disassembled, and immature endosomes and lysosomes appear at the early 2-cell stages. The V1-subunit of vacuolar ATPase is recruited to these endosomes and lysosomes and causes further acidification of endosomal-lysosomal organelles, suggesting that the ELYSA maintains endosomal-lysosomal activity in a static state in oocytes for timely activation during early development.