The onset of neurogenesis and neural differentiation in the embryonic nervous system is controlled by the coordinated expression of transcription factors that determine gene expression dynamics. Identification of novel transcription factors capable of regulating these processes is essential for our understanding of the mechanisms underlying neuronal differentiation. One of the focuses of our research was the protein Scratch2, which is a member of the Snail superfamily of zinc-finger transcription factors. Previous research in vertebrate model systems has shown that Scratch2 promotes cell cycle exit and survival in the posterior neural tube of zebrafish and controls neuronal migration in the murine cortex. Here, we used the chick embryonic spinal cord to investigate further the role of Scratch2. Our results indicate that, in the chick, Scratch2 expression is concentrated in cells that recently exited the mitotic cycle, coinciding with the expression domain of the proneural bHLH transcription factors Neurogenin2 and NeuroM, which promote and maintain the onset of neural differentiation. These results suggest that Scratch2 plays a relevant role in the early stages of differentiation, being consistent with data obtained in other animal models. To identify potential gene targets of Scratch2, we overexpressed altered forms of Scratch2 with in ovo electroporation and assessed the transcriptomic phenotypes using RNA-Seq. Our results revealed some weakly altered genes that were not confirmed in qPCR assays. We believe that this divergence has methodological reasons. First, electroporation of the neural tube generates a mosaic pattern and, consequently, the samples used for the RNA-Seq analysis were heterogeneous in their levels of transfection. Thus, we conclude that tissues electroporated with low efficiency do not produce ideal samples for RNA-Seq studies. Finally, we also present here the transcriptomic profiles of the neural tube from HH18 and HH29 (E6) embryos, encompassing a period of transition from the onset of neurogenesis to a predominantly differentiating cell population. Through cross-sample comparisons, we identified genes enriched in the neural tube and analyzed their temporal expression profiles and correlation. These results allowed us to identify novel regulators and modules of expression associated to neural differentiation. Importantly, this work generated a transcriptomic database that will contribute towards future research on the spinal cord development.