We performed a molecular analysis of dinosaur's eggshells collected in El Rosario, Baja California, using techniques such as Raman spectroscopy, Fourier transform infrared spectroscopy (FT-IR), X-ray powder diffraction (XRPD), and photoluminescence spectroscopy (PS). These techniques allowed us to identify calcite as the main mineral. The crystalline planes corresponding to this mineral were obtained with a hexagonal unit cell by Rietveld refinement. In addition, six crystallographic planes corresponding to quartz were identified by XRPD, with a rather large crystallite size compared to those obtained from calcite and albite. For this latter mineral, found in a low content, we were able to identify only three crystalline planes and three wavelengths of photoluminescence and micro-Raman signals at a very low intensity. In addition, the analysis by FT-IR allowed us to identify bands corresponding to nine amino acids and the components of the secondary structure that might very well be some ancestral proteins that had been conserved for so long, thanks to the mineralized structure. This type of structural characterization together with the optical one is a very relevant contribution to the field of paleontological research, mainly because these types of samples are unique in their type due to the biological relevance in Mexico that will allow us to understand the species that became extinct millions of years ago.