By coupling synoptic data from a basin-wide assessment of streamwater chemistry with network-based geostatistical analysis, we show that spatial processes differentially affect biogeochemical condition and pattern across a headwater stream network. We analyzed a high-resolution dataset consisting of 664 water samples collected every 100 m throughout 32 tributaries in an entire fifth-order stream network. These samples were analyzed for an exhaustive suite of chemical constituents. The fine grain and broad extent of this study design allowed us to quantify spatial patterns over a range of scales by using empirical semivariograms that explicitly incorporated network topology. Here, we show that spatial structure, as determined by the characteristic shape of the semivariograms, differed both among chemical constituents and by spatial relationship (flow-connected, flowunconnected, or Euclidean). Spatial structure was apparent at either a single scale or at multiple nested scales, suggesting separate processes operating simultaneously within the stream network and surrounding terrestrial landscape. Expected patterns of spatial dependence for flow-connected relationships (e.g., increasing homogeneity with downstream distance) occurred for some chemical constituents (e.g., dissolved organic carbon, sulfate, and aluminum) but not for others (e.g., nitrate, sodium). By comparing semivariograms for the different chemical constituents and spatial relationships, we were able to separate effects on streamwater chemistry of (i) fine-scale versus broad-scale processes and (ii) in-stream processes versus landscape controls. These findings provide insight on the hierarchical scaling of local, longitudinal, and landscape processes that drive biogeochemical patterns in stream networks.biogeochemistry | hydrologic connectivity | watershed | autocorrelation | heterogeneity S patial heterogeneity of ecosystems has been a focus of landscape ecology for more than two decades, but the linkages between these patterns and underlying processes are still poorly understood (1-3). Quantifying these pattern-process links is largely a problem of scale. Specifically, it is difficult to perform experiments at the landscape scale and measure responses over the range of spatial and temporal scales commensurate with the processes of interest (4,5).This problem of scale limits our understanding of both terrestrial and freshwater ecosystems. Effects of landscape pattern on ecosystem response can be evaluated at stream outlets by using biogeochemical signals that integrate physical and biological conditions of the catchment (6, 7). However, the spatial complexity of biogeochemical patterns and processes within stream networks has not been fully investigated because it is difficult to quantify such patterns at a grain and extent sufficient for examining spatial heterogeneity and processes across scales (8). Quantifying this variability and linking fine-scale and broadscale patterns and processes within the branched topology of stream networks is essenti...