Isopods of the suborder Cymothoida include ectoparasite species that cause physical damage and affect the development of the host by feeding on blood and tissues. On fishes, these parasites attach themselves to the skin, fins, gills, and oral cavity using claws on articulated legs. The ability to remain hidden in cavities even after the fish is caught enables isopods to be transported to new areas along with the host, making these parasites potential co-invaders. Understanding the role and environmental impact of parasites is essential, although research on parasitism in the context of biological invasions lags in comparison to general research on such invasions. Previous records indicate only two species of parasitic isopods in the São Francisco River basin. However, the present study reports the first record of two other species (Braga patagonica and Braga nasuta) on Pygocentrus piraya and in the basin itself. This demonstrates a lack of knowledge regarding fish parasites in the region, despite the presence of other parasites. Collaborations with research groups conducting fish sampling in the basin can contribute to expanding knowledge on these parasites and the training of human resources in fish Isopod parasites from lower São Francisco River Nauplius, 32: e20240530 parasitology. The present study provides important information on the presence of unidentified parasitic isopods on fishes in the São Francisco River basin, underscoring the need for further studies and expanding the geographic distribution of these parasites, as well as the host list for these isopods.