The interaction between the topography of the slope zone on the edge of the basin and the distribution of sediments is crucial for accurately predicting sediment distribution, but few studies emphasize the impact of stratigraphic overlap on the spatial evolution of sedimentary facies. The tectonic movement and sedimentary environment of Hala’alat Mountain in the northwest margin of the Junggar Basin are complex, and the sedimentary model of the whole Cretaceous system is still unclear. This article uses lithology, logging, and seismic data to explain the evolution process and sedimentary model of the Cretaceous system. The significant overlap of Cretaceous strata in the research area has a significant impact on the distribution of sedimentary facies zones and the development of sedimentary systems. Furthermore, this article explores the genesis mechanism of the Cretaceous stratigraphic overlap phenomenon, clearly defines the boundary range of stratigraphic overlap, and deeply analyzes how sedimentary facies zones are distributed and their subsequent evolution trends after the formation of overlap. The results demonstrate that there are apparent stratigraphic overlap phenomena in the second member (K
1
q
2
) and the third member (K
1
q
3
) of the Cretaceous Qingshuihe Formation in this area. The lithology at the bottom of the formation is grey sand conglomerate with finer grain size in the upper part, and the sedimentary facies are transitioned from fan delta facies to shore shallow lake beach bar facies. In member 1 (K
1
h
1
), member 2 (K
1
h
2
) and member 3 (K
1
h
3
) of the Hutubi Formation, due to the gradual slope and relatively stable sedimentary environment, the distance of stratigraphic overlap becomes shorter, the stratigraphic overlap phenomenon is no longer apparent and the sedimentary facies zone does not change. The study not only reveals the intrinsic relationship between stratigraphic overlap and the distribution of sedimentary facies zones, but also deepens the understanding of the dynamic evolution laws of sedimentary systems. The study on the overlap sedimentary mechanism of the Hala’alat Mountain in the northwest margin of Junggar Basin has reference significance.
