Submarine groundwater discharge into coastal areas is a common global phenomenon and is rapidly gaining scientific interest due to its influence on marine ecology, the coastal sedimentary environment, and its potential as a future freshwater resource. We conducted an integrated study of hydroacoustic surveys combined with geochemical pore water and water column investigations at a well-known groundwater seep site in Eckernförde Bay (Germany). We aim to better constrain the effects of shallow gas and submarine groundwater discharge on high-frequency multibeam backscatter data and to present acoustic indications for submarine groundwater discharge. Our high-quality hydroacoustic data reveal hitherto unknown internal structures within the pockmarks in Eckernförde Bay. Using precisely positioned sediment core samples, our hydroacoustic-geochemical approach can differentiate intrapockmark regimes that were formerly assigned to pockmarks of a different nature. We demonstrate that high-frequency multibeam data, in particular the backscatter signals, can be used to detect shallow free gas in areas of enhanced groundwater advection in muddy sediments. Intriguingly, our data reveal relatively small (typically <15 m across) pockmarks within the much larger, previously mapped pockmarks. The small pockmarks, which we refer to as "intrapockmarks," have formed due to the localized ascent of gas and groundwater; they manifest themselves as a new type of "eyed" pockmarks, revealed by their acoustic backscatter pattern. Our data suggest that, in organic-rich muddy sediments, morphological lows combined with a strong multibeam backscatter signal can be indicative of free shallow gas and subsequent advective groundwater flow.Plain Language Summary Groundwater that seeps out of the ocean floor is a common global phenomenon. Marine ecosystems are highly dependent on nutrient supply from land, and recent studies have suggested that groundwater seeping out of the seafloor supplies even more nutrients to the world's oceans than rivers do. Also, nearshore freshwater springs have been used as a source of drinking water for decades and large offshore groundwater reserves in continental shelves can potentially prevent future freshwater shortages. We use echo sounding methods to search for indications for submarine groundwater. The methods enable us to carry out detailed investigations of intriguing seafloor depressions (i.e., "pockmarks"). Our accurate measurements give new insights into the morphology and characterization of the Eckernförde Bay pockmarks and reveal a new type of pockmark that is related to seeping groundwater. In the muddy sediment of Eckernförde Bay, methane gas forms in the sediments due to microbial decomposition of biomass. In areas of enhanced groundwater advection, this methane gas is brought closer to the seafloor, where pockmarks form and where we can detect the gas with our sonar system. Given the abundant global distribution of muddy gaseous sediments, our findings have important implications for the future detect...