Genotype, severity of iron (Fe) deficiency, and interactions of Fe with Zn or Mn are important factors related to production of soybeans (Glycine max. L.) grown on high‐pH, highly calcareous soils. We studied the within seed distribution (whole seed, seed coat, and embryo) of major and minor elements in 21 soybean genotypes (G)s characterized as susceptible (S), moderately resistant (MR), and resistant (R) to Fe deficiency based on planting seed [Fe]. Trials were grown at three locations (Loc) in northwest MN (Ada, Crookston, and Fisher) during 2003. Differences among Locs in within seed distribution of N, P, K, Ca, and Mg concentrations were generally quite small, although often statistically significant. Differences among genotypes involving macronutrient contents highlighted large differences among S, MR, and R genotypes. Zinc and Mn, but not Fe, concentrations varied markedly with location, whereas [Fe]s were considerably higher in genotypes categorized as more resistant to Fe deficiency. Seed size declined, whereas seed [Fe]s and contents increased as resistance to Fe deficiency increased. Seed coat [Fe]s were greater than embryo [Fe]s within each genotypic classification, whereas seed tissue [Fe]s were greater in R and MR genotypes than in S ones. As seed tissue Fe increased, Mn decreased, and their sum remained nearly constant. Planting seed [Fe] and published visual chlorosis scores were quite similar in their association with measures of resistance.