The gravity wave control on the daily variation in nighttime ionization irregularity occurrence is studied using ionosonde data for the period 2002–2007 at magnetic equatorial location Trivandrum. Recent studies during low solar activity period have revealed that the seed perturbations should have the threshold amplitude required to trigger equatorial spread F (ESF), at a particular altitude and that this threshold amplitude undergoes seasonal and solar cycle changes. In the present study, the altitude variation of the threshold seed perturbations is examined for autumnal equinox of different years. Thereafter, a unique empirical model, incorporating the electrodynamical effects and the gravity wave modulation, is developed. Using the model the threshold curve for autumnal equinox season of any year may be delineated if the solar flux index (F10.7) is known. The empirical model is validated using the data for high, moderate, and low solar epochs in 2001, 2004, and 1995, respectively. This model has the potential to be developed further, to forecast ESF incidence, if the base height of ionosphere is in the altitude region where electrodynamics controls the occurrence of ESF. ESF irregularities are harmful for communication and navigation systems, and therefore, research is ongoing globally to predict them. In this context, this study is crucial for evolving a methodology to predict communication as well as navigation outages.